source: branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/AlignmentAlgorithm.java @ 1733

package de.ugoe.cs.autoquest.tasktrees.alignment.algorithms;

import java.util.ArrayList;

import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.SubstitutionMatrix;

public interface AlignmentAlgorithm {

        void align(NumberSequence input1, NumberSequence input2,
                        SubstitutionMatrix submat, float threshold);

        public abstract ArrayList<NumberSequence> getAlignment();

        /**
         * Get the alignment score between the two input strings.
         */
        public abstract double getAlignmentScore();

        public abstract ArrayList<Match> getMatches();

        public double getMaxScore();

        public abstract void printAlignment();

        public abstract void printDPMatrix();

}