package de.ugoe.cs.autoquest.tasktrees.alignment.matrix;

import java.util.HashSet;
import java.util.LinkedList;

import de.ugoe.cs.autoquest.tasktrees.treeifc.ITask;



public interface SubstitutionMatrix {
	

	public float getScore(int pos1, int pos2);

	public float getGapPenalty();

	public void generate(HashSet<ITask> uniqueTasks);
	
	public void update(LinkedList<ITask> newlyGeneratedTasks);

	
}