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Last change
on this file since 1612 was
1612,
checked in by rkrimmel, 10 years ago
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Removed parameters from alignmentalgorihm factory constructor and changed interface by adding a new align() method, which now gets all the data via parameter
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File size:
634 bytes
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| Rev | Line | |
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| [1586] | 1 | package de.ugoe.cs.autoquest.tasktrees.alignment.algorithms; |
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| 2 | |
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| 3 | import java.util.ArrayList; |
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| 4 | |
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| [1612] | 5 | import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.SubstitutionMatrix; |
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| 6 | |
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| [1586] | 7 | public interface AlignmentAlgorithm { |
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| 8 | |
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| [1612] | 9 | public abstract void align(int[] input1, int[] input2, SubstitutionMatrix submat,float threshold); |
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| 10 | |
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| [1586] | 11 | /** |
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| 12 | * Get the alignment score between the two input strings. |
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| 13 | */ |
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| 14 | public abstract double getAlignmentScore(); |
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| 15 | |
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| 16 | public abstract ArrayList<NumberSequence> getAlignment(); |
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| 17 | |
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| [1587] | 18 | public abstract void printDPMatrix(); |
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| 19 | |
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| 20 | public abstract void printAlignment(); |
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| 21 | |
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| [1592] | 22 | public abstract ArrayList<ArrayList<NumberSequence>> getMatches(); |
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| 23 | |
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| [1586] | 24 | } |
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