source: branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/AlignmentAlgorithmFactory.java @ 1612

package de.ugoe.cs.autoquest.tasktrees.alignment.algorithms;

import java.lang.reflect.Constructor;
import java.lang.reflect.InvocationTargetException;

import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.SubstitutionMatrix;

public class AlignmentAlgorithmFactory {
        
        public static void setDefaultAlgorithm(String algorithmname) {
                //TODO: check for valid algorihm class names here
                algorithmclass = algorithmname;
        }
        
        private static String algorithmclass = "de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWatermanRepeated";
        
        
        
        public static AlignmentAlgorithm create() {
                Class<?> newclass;
                Object object = null;
                try {
                         newclass = Class.forName(algorithmclass);
                         object = newclass.newInstance();
                        
                } catch (ClassNotFoundException | SecurityException | InstantiationException | IllegalAccessException | IllegalArgumentException e) {
                        // TODO Auto-generated catch block
                        e.printStackTrace();
                }
                //return new SmithWaterman(input1,input2,submat,threshold);
                //return new NeedlemanWunsch(input1,input2,submat,threshold);
                //return new SmithWatermanRepeated(input1,input2,submat,threshold);
                return (AlignmentAlgorithm) object;
        }
}