source: branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/SubstitutionMatrix.java @ 1572

Last change on this file since 1572 was 1572, checked in by rkrimmel, 10 years ago

Added parts of the PAL library, implemented UPGMA Algoritm for Feng Doolittle guide tree

File size: 213 bytes
Line 
1package de.ugoe.cs.autoquest.tasktrees.alignment.matrix;
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5public interface SubstitutionMatrix {
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8        public double getDistance(int pos1, int pos2);
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10        public double getGapPenalty();
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12        public void generate();
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15}
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