[1573] | 1 | // Identifier.java |
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| 2 | // |
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| 3 | // (c) 1999-2000 PAL Development Core Team |
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| 4 | // |
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| 5 | // This package may be distributed under the |
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| 6 | // terms of the Lesser GNU General Public License (LGPL) |
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| 7 | |
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| 8 | package de.ugoe.cs.autoquest.tasktrees.alignment.pal.misc; |
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| 9 | |
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| 10 | import java.io.Serializable; |
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| 11 | import de.ugoe.cs.autoquest.tasktrees.alignment.pal.util.Comparable; |
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| 12 | |
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| 13 | /** |
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| 14 | * An identifier for some sampled data. This will most often be |
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| 15 | * for example, the accession number of a DNA sequence, or the |
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| 16 | * taxonomic name that the sequence represents, et cetera. |
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| 17 | * |
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| 18 | * @version $Id: Identifier.java,v 1.6 2001/12/02 22:32:18 matt Exp $ |
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| 19 | * |
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| 20 | * @author Alexei Drummond |
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| 21 | */ |
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| 22 | |
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| 23 | |
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| 24 | public class Identifier implements |
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| 25 | Comparable, Nameable { |
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| 26 | |
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| 27 | private String name = null; |
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| 28 | |
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| 29 | |
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| 30 | public static Identifier ANONYMOUS = new Identifier(""); |
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| 31 | |
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| 32 | public Identifier() {} |
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| 33 | |
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| 34 | public Identifier(String name) { |
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| 35 | setName(name); |
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| 36 | } |
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| 37 | |
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| 38 | public String toString() { |
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| 39 | return getName(); |
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| 40 | } |
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| 41 | |
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| 42 | // implements Comparable interface |
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| 43 | |
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| 44 | public int compareTo(Object c) { |
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| 45 | |
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| 46 | return getName().compareTo(((Identifier)c).getName()); |
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| 47 | } |
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| 48 | |
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| 49 | public boolean equals(Object c) { |
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| 50 | |
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| 51 | if (c instanceof Identifier) { |
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| 52 | return getName().equals(((Identifier)c).getName()); |
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| 53 | } else return false; |
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| 54 | } |
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| 55 | |
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| 56 | // implements Nameable interface |
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| 57 | |
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| 58 | public String getName() { |
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| 59 | return name; |
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| 60 | } |
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| 61 | |
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| 62 | public void setName(String s) { |
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| 63 | name = s; |
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| 64 | } |
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| 65 | /** |
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| 66 | * Translates an array of identifiers into an array of strings |
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| 67 | */ |
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| 68 | public final static String[] getNames(Identifier[] ids) { |
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| 69 | String[] names = new String[ids.length]; |
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| 70 | for(int i = 0 ; i < names.length ; i++) { |
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| 71 | names[i] = ids[i].getName(); |
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| 72 | } |
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| 73 | return names; |
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| 74 | } |
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| 75 | /** |
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| 76 | * Translates an array of identifiers into an array of strings, with optional removal of particular identifier |
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| 77 | * @param toIgnoreIndex the index of an idetifier to ignore, if <0 no element is ignored |
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| 78 | */ |
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| 79 | public final static String[] getNames(Identifier[] ids, int toIgnore) { |
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| 80 | if(toIgnore<0||toIgnore>=ids.length) { |
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| 81 | return getNames(ids); |
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| 82 | } |
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| 83 | String[] names = new String[ids.length-1]; |
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| 84 | int index = 0; |
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| 85 | for(int i = 0 ; i < names.length ; i++) { |
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| 86 | if(i!=toIgnore) { |
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| 87 | names[index] = ids[i].getName(); |
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| 88 | index++; |
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| 89 | } |
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| 90 | } |
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| 91 | return names; |
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| 92 | } |
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| 93 | |
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| 94 | } |
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| 95 | |
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