source: trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/substitution/ObjectDistanceSubstitionMatrix.java @ 1449

package de.ugoe.cs.autoquest.plugin.alignment.substitution;

import java.util.ArrayList;
import java.util.Collection;
import java.util.Iterator;

import de.ugoe.cs.autoquest.eventcore.guimodel.GUIModel;
import de.ugoe.cs.autoquest.eventcore.guimodel.IGUIElement;

import java.util.List;

import misc.AlignmentHelpers;
import de.ugoe.cs.autoquest.eventcore.Event;
import de.ugoe.cs.util.console.GlobalDataContainer;

public class ObjectDistanceSubstitionMatrix implements SubstitutionMatrix {

        private ArrayList<int[][]> matrix;
        private int currentSequence;
        
        
        public ObjectDistanceSubstitionMatrix() {
                currentSequence = 0;
                matrix = new ArrayList<int[][]>();
        }
        
        @Override
        public String info() {
                // TODO Auto-generated method stub
                return null;
        }

        @Override
        public double getDistance(int pos1, int pos2) {
                // TODO Auto-generated method stub
                
                return matrix.get(currentSequence)[pos1][pos2];
        }
        
        public double getDistance(int sequence, int pos1, int pos2) {
                return  matrix.get(sequence)[pos1][pos2];
                
                
        }

        @Override
        public double getGapPenalty() {
                // TODO Auto-generated method stub
                return 0;
        }

        @Override
        public void generate(Collection<List<Event>> eventList) {
                
                for(Iterator<List<Event>> seqs = eventList.iterator(); seqs.hasNext();) {
                        matrix.add(new int[eventList.size()][eventList.size()]);
                        List<Event> tmpList = seqs.next();
                        
                        for (int i=0; i < tmpList.size(); i++) {
                                for (int j=0; j < tmpList.size(); j++) {
                                        IGUIElement first = (IGUIElement) tmpList.get(i).getTarget();
                                        IGUIElement second =(IGUIElement) tmpList.get(j).getTarget();
                                        matrix.get(currentSequence)[i][j] = AlignmentHelpers.distanceBetween(first, second);
                                }
                        }                       
                }
        }
}