source: trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/substitution/SubstitutionMatrix.java @ 1324

package de.ugoe.cs.autoquest.plugin.alignment.substitution;

import java.util.Collection;
import java.util.List;

import de.ugoe.cs.autoquest.eventcore.Event;

public interface SubstitutionMatrix {

        public String info();
        
        public double getDistance(int pos1, int pos2);

        public double getGapPenalty();

        public void generate(Collection<List<Event>> eventList);
        
}