Index: /trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/substitution/ObjectDistanceSubstitionMatrix.java
===================================================================
--- /trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/substitution/ObjectDistanceSubstitionMatrix.java	(revision 1330)
+++ /trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/substitution/ObjectDistanceSubstitionMatrix.java	(revision 1331)
@@ -1,11 +1,28 @@
 package de.ugoe.cs.autoquest.plugin.alignment.substitution;
 
+import java.util.ArrayList;
 import java.util.Collection;
+import java.util.Iterator;
+
+import de.ugoe.cs.autoquest.eventcore.guimodel.GUIModel;
+import de.ugoe.cs.autoquest.eventcore.guimodel.IGUIElement;
+
 import java.util.List;
 
+import misc.AlignmentHelpers;
 import de.ugoe.cs.autoquest.eventcore.Event;
+import de.ugoe.cs.util.console.GlobalDataContainer;
 
 public class ObjectDistanceSubstitionMatrix implements SubstitutionMatrix {
 
+	private ArrayList<int[][]> matrix;
+	private int currentSequence;
+	
+	
+	public ObjectDistanceSubstitionMatrix() {
+		currentSequence = 0;
+		matrix = new ArrayList<int[][]>();
+	}
+	
 	@Override
 	public String info() {
@@ -17,5 +34,6 @@
 	public double getDistance(int pos1, int pos2) {
 		// TODO Auto-generated method stub
-		return 0;
+		
+		return matrix.get(currentSequence)[pos1][pos2];
 	}
 
@@ -28,7 +46,19 @@
 	@Override
 	public void generate(Collection<List<Event>> eventList) {
-		// TODO Auto-generated method stub
+		GUIModel guimodel = (GUIModel) GlobalDataContainer.getInstance().getData("sequences_targets");
+		guimodel.condenseModel();
 		
+		for(Iterator<List<Event>> seqs = eventList.iterator(); seqs.hasNext();) {
+			matrix.add(new int[eventList.size()][eventList.size()]);
+			List<Event> tmpList = seqs.next();
+			
+			for (int i=0; i < tmpList.size(); i++) {
+				for (int j=0; j < tmpList.size(); j++) {
+					IGUIElement first = (IGUIElement) tmpList.get(i).getTarget();
+					IGUIElement second =(IGUIElement) tmpList.get(j).getTarget();
+					matrix.get(currentSequence)[i][j] = AlignmentHelpers.distanceBetween(first, second);
+				}
+			}			
+		}
 	}
-
 }