Changeset 1557


Ignore:
Timestamp:
05/28/14 11:28:12 (10 years ago)
Author:
rkrimmel
Message:

Smith-Waterman adjustments

Location:
branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees
Files:
1 deleted
2 edited

Legend:

Unmodified
Added
Removed
  • branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/FengDoolittle.java

    r1553 r1557  
    11package de.ugoe.cs.autoquest.tasktrees.alignment.algorithms; 
     2 
     3import de.ugoe.cs.autoquest.tasktrees.alignment.substitution.TriangleMatrix; 
    24 
    35public class FengDoolittle { 
    46 
     7        private TriangleMatrix scoreDistance; 
     8         
     9         
     10         
     11        public FengDoolittle() { 
     12                 
     13         
     14                 
     15                 
     16        } 
     17         
    518} 
  • branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

    r1555 r1557  
    2525import java.util.logging.Level; 
    2626 
     27import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.FengDoolittle; 
    2728import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence; 
    2829import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWaterman; 
     
    150151        submat.generate(); 
    151152         
    152         SmithWaterman sm = new SmithWaterman(numberseqs.get(1).getSequence(), numberseqs.get(1).getSequence(), submat); 
    153         sm.printDPMatrix(); 
     153        SmithWaterman sw = new SmithWaterman(numberseqs.get(1).getSequence(), numberseqs.get(1).getSequence(), submat); 
     154         
     155    
     156         
     157         
    154158       
    155159         
    156160         
    157161        //Hier mein kram hin 
    158         /*do { 
     162        do { 
    159163            System.out.println(); 
     164            FengDoolittle fd = new FengDoolittle(); 
     165             
    160166             
    161167            appData.getStopWatch().start("whole loop"); 
     
    167173            appData.getStopWatch().stop("whole loop"); 
    168174             
    169             //((TaskTreeNodeComparator) taskComparator).getStopWatch().dumpStatistics(System.out); 
    170             //((TaskTreeNodeComparator) taskComparator).getStopWatch().reset(); 
    171175             
    172176            appData.getStopWatch().dumpStatistics(System.out); 
     
    174178             
    175179        } 
    176         while (appData.detectedAndReplacedTasks());*/ 
     180        while (appData.detectedAndReplacedTasks()); 
    177181         
    178182        Console.println 
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