Index: branches/autoquest-core-tasktrees-alignment-test/src/test/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeatedTest.java
===================================================================
--- branches/autoquest-core-tasktrees-alignment-test/src/test/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeatedTest.java	(revision 1654)
+++ branches/autoquest-core-tasktrees-alignment-test/src/test/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeatedTest.java	(revision 1656)
@@ -68,6 +68,5 @@
 		assertNotNull(testalignment1);
 		testalignment1.align(ns1, ns2,submat,4);
-		testalignment1.printDPMatrix();
-		testalignment1.printAlignment();
+
 		
 		//testalignment1.getMatches().get(0).getFirstSequence().printSequence();
@@ -96,5 +95,7 @@
 		assertNotNull(testalignment1);
 		testalignment1.align(ns1, ns2,submat,3);
-		assertTrue(testalignment1.getAlignmentScore()==1.0);
+		testalignment1.printDPMatrix();
+		testalignment1.printAlignment();
+		assertTrue(testalignment1.getAlignmentScore()==4.0);
 		
 		}