Index: /branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/TriangleMatrix.java
===================================================================
--- /branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/TriangleMatrix.java	(revision 1696)
+++ /branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/TriangleMatrix.java	(revision 1697)
@@ -32,5 +32,4 @@
 	}
 	
-
 	
 	public String toString() {
Index: /branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java
===================================================================
--- /branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java	(revision 1696)
+++ /branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java	(revision 1697)
@@ -572,5 +572,5 @@
 		Console.traceln(Level.INFO, "generating substitution matrix");
 		ObjectDistanceSubstitionMatrix submat = new ObjectDistanceSubstitionMatrix(
-				appData.getUniqueTasks(), 6, -3,false);
+				appData.getUniqueTasks(), 6, -3,true);
 		submat.generate();
 
@@ -584,10 +584,4 @@
 		Console.traceln(Level.INFO, "retrieving significant sequence pieces");
 		for (int i = 0; i < appData.getNumberSequences().size(); i++) {
-			Console.traceln(
-					Level.FINEST,
-					"retrieving significant sequence pieces:  "
-							+ Math.round((float) i
-									/ (float) appData.getNumberSequences()
-											.size() * 100) + "%");
 			for (int j = 0; j < appData.getNumberSequences().size(); j++) {
 				if (i != j) {
@@ -597,6 +591,5 @@
 		}
 
-		Console.traceln(Level.FINEST,
-				"retrieving significant sequence pieces:  100%");
+
 		Console.traceln(Level.INFO, "searching for patterns occuring most");