Index: /trunk/autoquest-plugin-jfc/src/main/java/de/ugoe/cs/autoquest/plugin/jfc/commands/CMDgenerateAltIndex.java
===================================================================
--- /trunk/autoquest-plugin-jfc/src/main/java/de/ugoe/cs/autoquest/plugin/jfc/commands/CMDgenerateAltIndex.java	(revision 2281)
+++ /trunk/autoquest-plugin-jfc/src/main/java/de/ugoe/cs/autoquest/plugin/jfc/commands/CMDgenerateAltIndex.java	(revision 2282)
@@ -130,6 +130,5 @@
     @Override
     public String help() {
-        System.out.println("parseJFCDirwithJacaretoIndices <path> {<sequencesName>} {<menuFile>}");
-        return null;
+        return "generateAltIndex";
     }
 
Index: /trunk/autoquest-plugin-jfc/src/main/java/de/ugoe/cs/autoquest/plugin/jfc/commands/CMDparseJFCDirwithJacaretoIndices.java
===================================================================
--- /trunk/autoquest-plugin-jfc/src/main/java/de/ugoe/cs/autoquest/plugin/jfc/commands/CMDparseJFCDirwithJacaretoIndices.java	(revision 2281)
+++ /trunk/autoquest-plugin-jfc/src/main/java/de/ugoe/cs/autoquest/plugin/jfc/commands/CMDparseJFCDirwithJacaretoIndices.java	(revision 2282)
@@ -129,7 +129,5 @@
     @Override
     public String help() {
-        // TODO Auto-generated method stub
-        System.out.println("parseJFCDirwithJacaretoIndices <path> {<sequencesName>} {<menuFile>}");
-        return null;
+        return "parseJFCDirwithJacaretoIndices <path> {<sequencesName>} {<menuFile>}";
     }
 
Index: /trunk/java-utils/src/main/java/de/ugoe/cs/util/console/CommandExecuter.java
===================================================================
--- /trunk/java-utils/src/main/java/de/ugoe/cs/util/console/CommandExecuter.java	(revision 2281)
+++ /trunk/java-utils/src/main/java/de/ugoe/cs/util/console/CommandExecuter.java	(revision 2282)
@@ -250,5 +250,5 @@
                                             className);
                                     if (Command.class.isAssignableFrom(clazz)) {
-                                      commands.add((Command) clazz.getConstructor().newInstance());
+                                        commands.add((Command) clazz.getConstructor().newInstance());
                                     }
                                 }
@@ -280,4 +280,6 @@
                                                 loader.loadClass(commandPackage.getPackageName() +
                                                     "." + className);
+                                            
+                                            Console.traceln(Level.WARNING, clazz.getName());
                                             if (Command.class.isAssignableFrom(clazz)) {
                                                 commands.add((Command) clazz.getConstructor().newInstance());
@@ -286,10 +288,4 @@
                                     }
                                     while (entry != null);
-                                }
-                                catch (Exception e) {
-                                    e.printStackTrace();
-                                    Console
-                                        .traceln(Level.WARNING,
-                                                 "could not read contents of " + "jar " + jarFile);
                                 }
                                 finally {