AssertEventTest contains tests for the class
+ * {@link AssertEvent}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class AssertEventTest {
+
+ @Test
+ public void testAssertEvent_1() throws Exception {
+ String type = "typeString";
+
+ AssertEventFileEqualsReplayTest contains tests for the class
+ * {@link FileEqualsReplay}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class FileEqualsReplayTest {
+
+ private final static String ENDLINE = System.getProperty("line.separator");
+
+ @Test
+ public void testFileEqualsReplay_1() throws Exception {
+ String expectedFile = "expectedFileString";
+ String actualFile = "actualFileString";
+
+ FileEqualsReplay result = new FileEqualsReplay(expectedFile, actualFile);
+
+ assertNotNull(result);
+ assertEquals(expectedFile, result.expectedFile);
+ assertEquals(actualFile, result.actualFile);
+ }
+
+ @Test(expected = java.security.InvalidParameterException.class)
+ public void testFileEqualsReplay_2() throws Exception {
+ String actualFile = "actualFileString";
+
+ new FileEqualsReplay(null, actualFile);
+ }
+
+ @Test(expected = java.security.InvalidParameterException.class)
+ public void testFileEqualsReplay_3() throws Exception {
+ String expectedFile = "expectedFileString";
+
+ new FileEqualsReplay(expectedFile, null);
+ }
+
+ @Test
+ public void testGetReplay_1() throws Exception {
+ FileEqualsReplay fixture = new FileEqualsReplay("", "");
+
+ String result = fixture.getReplay();
+
+ assertEquals(" TestAll builds a suite that can be used to run all
+ * of the tests within its package as well as within any subpackages of its
+ * package.
+ *
+ * @generatedBy CodePro at 12/21/11 11:53 AM
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+@RunWith(Suite.class)
+@Suite.SuiteClasses({
+ FileEqualsReplayTest.class,
+ TextEqualsReplayTest.class,
+ AssertEventTest.class
+})
+public class TestAll {
+
+ public static void main(String[] args) {
+ JUnitCore.runClasses(new Class[] { TestAll.class });
+ }
+}
Index: /trunk/quest-core-assertions-test/src/test/java/de/ugoe/cs/quest/assertions/TextEqualsReplayTest.java
===================================================================
--- /trunk/quest-core-assertions-test/src/test/java/de/ugoe/cs/quest/assertions/TextEqualsReplayTest.java (revision 518)
+++ /trunk/quest-core-assertions-test/src/test/java/de/ugoe/cs/quest/assertions/TextEqualsReplayTest.java (revision 518)
@@ -0,0 +1,85 @@
+package de.ugoe.cs.quest.assertions;
+
+import org.junit.*;
+
+import de.ugoe.cs.quest.assertions.TextEqualsReplay;
+import static org.junit.Assert.*;
+
+/**
+ * The class TextEqualsReplayTest contains tests for the class
+ * {@link TextEqualsReplay}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class TextEqualsReplayTest {
+
+ private final static String ENDLINE = System.getProperty("line.separator");
+
+ @Test
+ public void testTextEqualsReplay_1() throws Exception {
+ String expectedValue = "expectedValueString";
+ String target = "targetString";
+
+ TextEqualsReplay result = new TextEqualsReplay(expectedValue, target);
+
+ assertNotNull(result);
+ assertEquals(expectedValue, result.expectedValue);
+ assertEquals(target, result.target);
+ }
+
+ @Test
+ public void testTextEqualsReplay_2() throws Exception {
+ String target = "targetString";
+
+ TextEqualsReplay result = new TextEqualsReplay(null, target);
+
+ assertNotNull(result);
+ assertEquals(null, result.expectedValue);
+ assertEquals(target, result.target);
+ }
+
+ @Test(expected = java.security.InvalidParameterException.class)
+ public void testTextEqualsReplay_3() throws Exception {
+ String expectedValue = "expectedValueString";
+
+ new TextEqualsReplay(expectedValue, null);
+ }
+
+ @Test
+ public void testGetReplay_1() throws Exception {
+ TextEqualsReplay fixture = new TextEqualsReplay("", "");
+
+ String result = fixture.getReplay();
+
+ assertEquals(" + * Subclass of {@link ReplayableEvent} for assertions + *
+ * + * @author Jeffrey Hall + * @version 1.0 + * + * @param+ * Id for object serialization. + *
+ */ + private static final long serialVersionUID = 1L; + + /** + *+ * Constructor. Creates a new event with the given type. + *
+ * + * @param type + * type of the event + * @see Event#Event(String) + */ + public AssertEvent(String type) { + super(type); + } +} Index: /trunk/quest-core-assertions/src/main/java/de/ugoe/cs/quest/assertions/FileEqualsReplay.java =================================================================== --- /trunk/quest-core-assertions/src/main/java/de/ugoe/cs/quest/assertions/FileEqualsReplay.java (revision 518) +++ /trunk/quest-core-assertions/src/main/java/de/ugoe/cs/quest/assertions/FileEqualsReplay.java (revision 518) @@ -0,0 +1,91 @@ +package de.ugoe.cs.quest.assertions; + +import java.security.InvalidParameterException; + +import de.ugoe.cs.quest.eventcore.IReplayable; +import de.ugoe.cs.util.StringTools; + +/** + *
+ * This class defines the replay for file equals assertions. + *
+ * + * @author Jeffrey Hall, Steffen Herbold + * @version 2.0 + */ +public class FileEqualsReplay implements IReplayable { + + /** + *+ * The file that should be equal to expectedFile. + *
+ */ + protected final String actualFile; + + /** + *+ * The file that is used as the reference. + *
+ */ + protected final String expectedFile; + + /** + *+ * Id for object serialization. + *
+ */ + private static final long serialVersionUID = 1L; + + /** + *+ * Constructor. Creates a new FileEqualsReplay. + *
+ * + * @param expectedFile + * name and path of the expected file + * @param actualFile + * name and path of the actual file + * @throws InvalidParameterException + * thrown if expectedFile or actualFile are null + */ + public FileEqualsReplay(String expectedFile, String actualFile) { + if (expectedFile == null) { + throw new InvalidParameterException( + "expected file must not be null"); + } + if (actualFile == null) { + throw new InvalidParameterException("actual file must not be null"); + } + this.expectedFile = expectedFile; + this.actualFile = actualFile; + } + + /* + * (non-Javadoc) + * + * @see de.ugoe.cs.quest.eventcore.IReplayable#getReplay() + */ + public String getReplay() { + + String actualFileTmp = StringTools.xmlEntityReplacement(actualFile); + String expectedFileTmp = StringTools.xmlEntityReplacement(expectedFile); + + StringBuilder currentMsgStr = new StringBuilder(800); + currentMsgStr.append("+ * This class defines the replay for a textEquals assertion. + *
+ * + * @author Jeffrey Hall, Steffen Herbold + * @version 2.0 + */ +public class TextEqualsReplay implements IReplayable { + + /** + *+ * Reference value which is compared to the targets text. + *
+ */ + protected final String expectedValue; + + /** + *+ * Target to which the text is compared. + *
+ */ + protected final String target; + + /** + *+ * Id for object serialization. + *
+ */ + private static final long serialVersionUID = 1L; + + /** + *
+ * Constructor. Creates a new TextEqualsReplay.
+ *
+ * @param expectedValue
+ * expected string value
+ * @param target
+ * string description of the target whose string value is
+ * compared to the expected value
+ * @throws InvalidParameterException
+ * thrown if target is null
+ */
+ public TextEqualsReplay(String expectedValue, String target) {
+ if (target == null) {
+ throw new InvalidParameterException("target must not be null");
+ }
+ this.expectedValue = expectedValue;
+ this.target = target;
+ }
+
+ /*
+ * (non-Javadoc)
+ *
+ * @see de.ugoe.cs.quest.eventcore.IReplayable#getReplay()
+ */
+ @Override
+ public String getReplay() {
+
+ String expectedValueTmp = StringTools.xmlEntityReplacement(expectedValue);
+
+ StringBuilder currentMsgStr = new StringBuilder(400);
+ currentMsgStr.append("
+ * This class calculates various types of sequence coverage in relation to a
+ * collection of observed sequences.
+ *
+ * Sequences for which the coverage is calculated.
+ *
+ * Observed sequences that are baseline for the coverage calculation.
+ *
+ * Length of the subsequences in relation to which the covarage is
+ * calculated.
+ *
+ * All subsequences of {@link #length} of {@link #sequences}.
+ *
+ * All subsequences of {@link #length} of {@link #observedSequences}.
+ *
+ * Constructor. Creates a new CoverageCalculatorObserved for given
+ * collections of observed sequences and generated sequences.
+ *
+ * Calculates the percentage of subsequences of length k that occur, with
+ * reference to those that were observed.
+ *
+ * Calculates the weight of subsequences of length k that occur, with
+ * reference to those that were observed.
+ *
+ * Calculates the percentage of generated subsequences of length k that
+ * occur and have not been observed, with reference to all generated
+ * subsequences.
+ *
+ * Calculates the percentage of generated subsequences of length k that
+ * occur and have not been observed, with references to all possible new
+ * subsequences.
+ *
+ * Calculates the weight of generated subsequences of length k that occur
+ * and have not been observed, with references to all possible new
+ * subsequences.
+ *
+ * Returns the number of covered subsequences of length k.
+ *
+ * Returns the number of covered subsequences of length k.
+ *
+ * Helper function that calcuates the subsequences of length k that have
+ * been observed and generated.
+ *
+ * This class calculates various types of sequence coverage in relation to a
+ * stochastic process.
+ *
+ * Stochastic process that is the foundation for probabilistic coverages and
+ * coverages with reference to all possible sequences.
+ *
+ * Sequences for which the coverage is calculated.
+ *
+ * Length of the subsequences in relation to which the coverage is
+ * calculated.
+ *
+ * All subsequences of {@link #length} of {@link #sequences}.
+ *
+ * All subsequences of {@link #length} that can be generated by
+ * {@link #process}.
+ *
+ * The probabilities of all subsequences of {@link #length} according to
+ * {@link #process}.
+ *
+ * Constructor. Creates a new CoverageCalculatorProcess for a given
+ * stochastic process and generated sequences.
+ *
+ * Calculates the percentage of subsequences of length k that occur,
+ * including those that cannot be generated by {@link #process}.
+ *
+ * Calculates the percentage of subsequences of length k that occur and can
+ * generated by {@link #process}.
+ *
+ * Calculates the weight of the subsequences that occur with relation to
+ * {@link #process}, i.e., the mass of the subsequence probability covered
+ * by the subsequences.
+ *
+ * Returns the number of covered subsequences of length k.
+ *
+ * Returns the number of possible subsequences of length k according to the
+ * stochastic process.
+ *
+ * Sets a new collection of sequences for which the coverage is analyzed.
+ *
+ * This class gathers some helper functions to work with sequences.
+ *
+ * Private constructor to prevent initializing of the class.
+ *
+ * Calculates the weights for all sequences passed to this function as
+ * defined by the stochastic process and stores them in a {@link Map}. The
+ * weights are normalized, i.e., the sum of all weights contained in this
+ * map is 1.
+ *
+ * Calculates the number of all existing sequences of a given length,
+ * regardless whether they are possible or not.
+ *
+ * Creates a {@link Set} of all subsequences of a given length that are
+ * contained in a sequence collection.
+ * CoverageCalculatorObservedTest contains tests for the
+ * class {@link CoverageCalculatorObserved}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class CoverageCalculatorObservedTest {
+
+ CollectionCoverageCalculatorProcessTest contains tests for the
+ * class {@link CoverageCalculatorProcess}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class CoverageCalculatorProcessTest {
+
+ SetSequenceToolsTest contains tests for the class {@link SequenceTools}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class SequenceToolsTest {
+
+ CollectionTestAll builds a suite that can be used to run all
+ * of the tests within its package as well as within any subpackages of its
+ * package.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+@RunWith(Suite.class)
+@Suite.SuiteClasses({
+ CoverageCalculatorObservedTest.class,
+ CoverageCalculatorProcessTest.class,
+ SequenceToolsTest.class
+})
+public class TestAll {
+
+ public static void main(String[] args) {
+ JUnitCore.runClasses(new Class[] { TestAll.class });
+ }
+}
Index: /trunk/quest-core-coverage/.classpath
===================================================================
--- /trunk/quest-core-coverage/.classpath (revision 518)
+++ /trunk/quest-core-coverage/.classpath (revision 518)
@@ -0,0 +1,20 @@
+
+DeterministicFiniteAutomatonTest contains tests for
+ * the class {@link DeterministicFiniteAutomaton}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class DeterministicFiniteAutomatonTest {
+
+ CollectionFirstOrderMarkovModelTest contains tests for the class
+ * {@link FirstOrderMarkovModel}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class FirstOrderMarkovModelTest {
+
+ CollectionHighOrderMarkovModelTest contains tests for the class
+ * {@link HighOrderMarkovModel}.
+ *
+ * @author Steffen Herbold
+ * @version 1.0
+ */
+public class HighOrderMarkovModelTest {
+
+ Collection