Index: /trunk/quest-plugin-guitar/.classpath
===================================================================
--- /trunk/quest-plugin-guitar/.classpath	(revision 727)
+++ /trunk/quest-plugin-guitar/.classpath	(revision 728)
@@ -13,4 +13,5 @@
 		</attributes>
 	</classpathentry>
+	<classpathentry kind="src" path="src/main/resources"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
 		<attributes>
Index: /trunk/quest-plugin-guitar/src/main/java/de/ugoe/cs/quest/plugin/guitar/commands/CMDefgTestCasesToSequences.java
===================================================================
--- /trunk/quest-plugin-guitar/src/main/java/de/ugoe/cs/quest/plugin/guitar/commands/CMDefgTestCasesToSequences.java	(revision 727)
+++ /trunk/quest-plugin-guitar/src/main/java/de/ugoe/cs/quest/plugin/guitar/commands/CMDefgTestCasesToSequences.java	(revision 728)
@@ -79,5 +79,5 @@
 	@Override
 	public String help() {
-		return "efgTestCasesToSequences <folder> <sequencesName> {<efgFileName>}";
+		return "efgTestCasesToSequences <directory> <sequencesName> {<guiFileName>}";
 	}
 
Index: /trunk/quest-plugin-guitar/src/main/resources/manuals/efgTestCasesToSequences
===================================================================
--- /trunk/quest-plugin-guitar/src/main/resources/manuals/efgTestCasesToSequences	(revision 728)
+++ /trunk/quest-plugin-guitar/src/main/resources/manuals/efgTestCasesToSequences	(revision 728)
@@ -0,0 +1,10 @@
+Loads GUITAR test cases from a directory and treats each test case as a sequence. The result is a collection of sequences.
+
+$USAGE$
+<directory> name of the directory
+<sequencesName> name of the sequences
+<guiFileName> optional; if specified, this GUI file is used to retrieve widgetIds in addtion to the eventIds
+
+Example(s):
+efgTestCasesToSequences testcaseDir sequences
+efgTestCasesToSequences testcaseDir sequences guifile.gui 
Index: /trunk/quest-plugin-guitar/src/main/resources/manuals/efgToDFA
===================================================================
--- /trunk/quest-plugin-guitar/src/main/resources/manuals/efgToDFA	(revision 728)
+++ /trunk/quest-plugin-guitar/src/main/resources/manuals/efgToDFA	(revision 728)
@@ -0,0 +1,8 @@
+Loads a GUITAR EFG file and creates a DFA based on the contents.
+
+$USAGE$
+<filename> name of the efg file
+<modelname> name of the DFA
+
+Example(s):
+efgToDFA efgfile.efg dfa
Index: /trunk/quest-plugin-guitar/src/main/resources/manuals/efgToMM
===================================================================
--- /trunk/quest-plugin-guitar/src/main/resources/manuals/efgToMM	(revision 728)
+++ /trunk/quest-plugin-guitar/src/main/resources/manuals/efgToMM	(revision 728)
@@ -0,0 +1,8 @@
+Loads a GUITAR EFG file and creates a first-order Markov model based on the contents. All transitions in the Markov model are equally probable.
+
+$USAGE$
+<filename> name of the efg file
+<modelname> name of the Markov model
+
+Example(s):
+efgToMM efgfile.efg markovModel
Index: /trunk/quest-plugin-jfc/.classpath
===================================================================
--- /trunk/quest-plugin-jfc/.classpath	(revision 727)
+++ /trunk/quest-plugin-jfc/.classpath	(revision 728)
@@ -13,4 +13,5 @@
 		</attributes>
 	</classpathentry>
+	<classpathentry kind="src" path="src/main/resources"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
 		<attributes>
Index: /trunk/quest-plugin-jfc/src/main/java/de/ugoe/cs/quest/plugin/jfc/commands/CMDparseDirJFC.java
===================================================================
--- /trunk/quest-plugin-jfc/src/main/java/de/ugoe/cs/quest/plugin/jfc/commands/CMDparseDirJFC.java	(revision 727)
+++ /trunk/quest-plugin-jfc/src/main/java/de/ugoe/cs/quest/plugin/jfc/commands/CMDparseDirJFC.java	(revision 728)
@@ -77,5 +77,5 @@
     @Override
     public String help() {
-        return "parseDirJFC <path> {<sequencesName>}";
+        return "parseDirJFC <directory> {<sequencesName>}";
     }
 
Index: /trunk/quest-plugin-jfc/src/main/java/de/ugoe/cs/quest/plugin/jfc/commands/CMDpreprocessDirJFC.java
===================================================================
--- /trunk/quest-plugin-jfc/src/main/java/de/ugoe/cs/quest/plugin/jfc/commands/CMDpreprocessDirJFC.java	(revision 727)
+++ /trunk/quest-plugin-jfc/src/main/java/de/ugoe/cs/quest/plugin/jfc/commands/CMDpreprocessDirJFC.java	(revision 728)
@@ -115,5 +115,5 @@
 	@Override
 	public String help() {
-		return "preprocessDirJFC <sourcePath> <targetPath>";
+		return "preprocessDirJFC <sourceDirectory> <targetDirectory>";
 	}
 
Index: /trunk/quest-plugin-jfc/src/main/resources/manuals/parseDirJFC
===================================================================
--- /trunk/quest-plugin-jfc/src/main/resources/manuals/parseDirJFC	(revision 728)
+++ /trunk/quest-plugin-jfc/src/main/resources/manuals/parseDirJFC	(revision 728)
@@ -0,0 +1,9 @@
+Loads sequences from a directory that contains JFC log files. The directory must not contain any other files!
+
+$USAGE$
+<directory> directory where the log files are located
+<sequencesName> optional; name of the sequences; default: sequences
+
+Example(s):
+parseDirJFC usagedata/jfc
+parseDirJFC usagedata/jfc jfc_sequences
Index: /trunk/quest-plugin-jfc/src/main/resources/manuals/parseJFC
===================================================================
--- /trunk/quest-plugin-jfc/src/main/resources/manuals/parseJFC	(revision 728)
+++ /trunk/quest-plugin-jfc/src/main/resources/manuals/parseJFC	(revision 728)
@@ -0,0 +1,9 @@
+Loads sequences from a JFC log file.
+
+$USAGE$
+<filename> name of the JFC log file
+<sequencesName> optional; name of the sequences; default: sequences
+
+Example(s):
+parseJFC usagedata/jfc/jfclog_01.xml
+parseJFC usagedata/jfcjfclog_01.xml jfc_sequences
Index: /trunk/quest-plugin-jfc/src/main/resources/manuals/preprocessDirJFC
===================================================================
--- /trunk/quest-plugin-jfc/src/main/resources/manuals/preprocessDirJFC	(revision 728)
+++ /trunk/quest-plugin-jfc/src/main/resources/manuals/preprocessDirJFC	(revision 728)
@@ -0,0 +1,8 @@
+Pre-processes files created by the JFCMonitor into the JFC log format expected by parseDirJFC and parseJFC. The command processes all files in a directory and stores the pre-processed files in another directory.
+
+$USAGE$
+<sourceDirectory> directory where the files to be pre-processed are located
+<targetDirectory> directory for the processed files
+
+Example(s):
+preprocessDirJFC usagedata/jfcraw usagedata/jfc
Index: /trunk/quest-plugin-jfc/src/main/resources/manuals/preprocessJFC
===================================================================
--- /trunk/quest-plugin-jfc/src/main/resources/manuals/preprocessJFC	(revision 728)
+++ /trunk/quest-plugin-jfc/src/main/resources/manuals/preprocessJFC	(revision 728)
@@ -0,0 +1,8 @@
+Pre-processes a file created by the JFCMonitor into the JFC log format expected by parseDirJFC and parseJFC.
+
+$USAGE$
+<sourceFile> file to be pre-processed
+<targetFile> processed file
+
+Example(s):
+preprocessDirJFC usagedata/jfcraw/jfclograw_01 usagedata/jfc/jfclog_01.xml
Index: /trunk/quest-plugin-mfc/.classpath
===================================================================
--- /trunk/quest-plugin-mfc/.classpath	(revision 727)
+++ /trunk/quest-plugin-mfc/.classpath	(revision 728)
@@ -8,4 +8,5 @@
 	</classpathentry>
 	<classpathentry kind="src" path="src/main/java"/>
+	<classpathentry kind="src" path="src/main/resources"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
 		<attributes>
Index: /trunk/quest-plugin-mfc/src/main/java/de/ugoe/cs/quest/plugin/mfc/commands/CMDconvertDirToXml.java
===================================================================
--- /trunk/quest-plugin-mfc/src/main/java/de/ugoe/cs/quest/plugin/mfc/commands/CMDconvertDirToXml.java	(revision 727)
+++ /trunk/quest-plugin-mfc/src/main/java/de/ugoe/cs/quest/plugin/mfc/commands/CMDconvertDirToXml.java	(revision 728)
@@ -27,5 +27,5 @@
 	@Override
 	public String help() {
-		return "convertDirToXml <sourceFolder> <targetFile> {<base64>}";
+		return "convertDirToXml <sourceDirectory> <targetFile> {<base64>}";
 	}
 
Index: /trunk/quest-plugin-mfc/src/main/resources/manuals/convertDirToXml
===================================================================
--- /trunk/quest-plugin-mfc/src/main/resources/manuals/convertDirToXml	(revision 728)
+++ /trunk/quest-plugin-mfc/src/main/resources/manuals/convertDirToXml	(revision 728)
@@ -0,0 +1,10 @@
+Pre-processes a directory of log files created by the MFCUsageMonitor (aka usagelog.dll, userlog.dll) and converts the data into a single XML file that contains all sessions. Optionally, the pre-processing can decode the data from a base64 encoding.
+
+$USAGE$
+<sourceDirectory> directory where the files to be pre-processed are located
+<targetFile> processed file
+<base64> optional; if true, the files are base64 decoded; default: false
+
+Example(s):
+convertDirToXml usagedata/mfcraw usagedata/mfc.xml
+convertDirToXml usagedata/mfcraw usagedata/mfc.xml true
Index: /trunk/quest-plugin-mfc/src/main/resources/manuals/convertToXml
===================================================================
--- /trunk/quest-plugin-mfc/src/main/resources/manuals/convertToXml	(revision 728)
+++ /trunk/quest-plugin-mfc/src/main/resources/manuals/convertToXml	(revision 728)
@@ -0,0 +1,10 @@
+Pre-processes log file created by the MFCUsageMonitor (aka usagelog.dll, userlog.dll) and converts the data into a single XML file that contains all sessions. Optionally, the pre-processing can decode the data from a base64 encoding.
+
+$USAGE$
+<sourceFile> file to be pre-processed
+<targetFile> processed file
+<base64> optional; if true, the file is base64 decoded; default: false
+
+Example(s):
+convertToXml usagedata/mfcraw.log usagedata/mfc.xml
+convertToXml usagedata/mfcraw.log usagedata/mfc.xml true
Index: /trunk/quest-plugin-mfc/src/main/resources/manuals/parseXML
===================================================================
--- /trunk/quest-plugin-mfc/src/main/resources/manuals/parseXML	(revision 728)
+++ /trunk/quest-plugin-mfc/src/main/resources/manuals/parseXML	(revision 728)
@@ -0,0 +1,11 @@
+Parses a log file that contains MFC sessions into a collection of sequences.
+
+$USAGE$
+<filename> name of the log file
+<sequencesName> optional; name of the sequences; default: sequences
+<countMessageOccurences> optional; if true, a statistic how often each message occurs in the log intended for debugging and optimization is generated; default: false
+
+Example(s):
+parseXML usagedata/mfc.xml
+parseXML usagedata/mfc.xml mfc_sequences
+parseXML usagedata/mfc.xml mfc_sequences true
Index: /trunk/quest-plugin-php/.classpath
===================================================================
--- /trunk/quest-plugin-php/.classpath	(revision 727)
+++ /trunk/quest-plugin-php/.classpath	(revision 728)
@@ -13,4 +13,5 @@
 		</attributes>
 	</classpathentry>
+	<classpathentry kind="src" path="src/main/resources"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
 		<attributes>
Index: /trunk/quest-plugin-php/src/main/resources/manuals/loadWebSequences
===================================================================
--- /trunk/quest-plugin-php/src/main/resources/manuals/loadWebSequences	(revision 728)
+++ /trunk/quest-plugin-php/src/main/resources/manuals/loadWebSequences	(revision 728)
@@ -0,0 +1,15 @@
+Parses a log created by the PHPMonitor and creates a collection of user sequences. 
+
+The optional parameters <timeout>, <minSessionLength>, and <maxSessionLength> can only be used together.
+
+The optional parameters <generateFrequentUsers> and <frequentUserThreshold> can only be used together. 
+
+$USAGE$
+<filename> name of the log file
+<sequencesName> name of the sequences
+<serverUrl> URL of the server that has been monitored
+<timeout> optional; timeout of a user session in seconds; default: 360000 (1 hour) 
+<minSessionLength> optional; minimal length of a user session; default: 2
+<maxSessionLength> optional; maximal length of a user session; default: 100
+<generateFrequentUsers> optional; if true, seperate sequence collection for frequent users are generated; default: false
+<frequentUserThreshold> optional; defines how many sessions of the same user are required, to be counted as a frequent user