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1 | package de.ugoe.cs.autoquest.tasktrees.alignment.algorithms; |
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2 | |
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3 | import java.util.ArrayList; |
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4 | |
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5 | import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.SubstitutionMatrix; |
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6 | |
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7 | public interface AlignmentAlgorithm { |
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8 | |
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9 | /** |
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10 | * Get the alignment score between the two input strings. |
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11 | */ |
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12 | public abstract double getAlignmentScore(); |
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13 | |
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14 | public abstract ArrayList<NumberSequence> getAlignment(); |
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15 | |
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16 | public abstract void printDPMatrix(); |
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17 | |
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18 | public abstract void printAlignment(); |
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19 | |
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20 | public abstract ArrayList<Match> getMatches(); |
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21 | |
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22 | public double getMaxScore(); |
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23 | |
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24 | void align(NumberSequence input1, NumberSequence input2, |
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25 | SubstitutionMatrix submat, float threshold); |
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26 | |
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27 | } |
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