source: branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/SubstitutionMatrix.java @ 1733

package de.ugoe.cs.autoquest.tasktrees.alignment.matrix;

import java.util.HashSet;
import java.util.LinkedList;

import de.ugoe.cs.autoquest.tasktrees.treeifc.ITask;

public interface SubstitutionMatrix {

        public void generate(HashSet<ITask> uniqueTasks);

        public float getGapPenalty();

        public float getScore(int pos1, int pos2);

        public void update(LinkedList<ITask> newlyGeneratedTasks);

}