source: branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/SubstitutionMatrix.java @ 1734

/*
 * 
 */
package de.ugoe.cs.autoquest.tasktrees.alignment.matrix;

import java.util.HashSet;
import java.util.LinkedList;

import de.ugoe.cs.autoquest.tasktrees.treeifc.ITask;

// TODO: Auto-generated Javadoc
/**
 * The Interface SubstitutionMatrix.
 */
public interface SubstitutionMatrix {

        /**
         * Generate.
         *
         * @param uniqueTasks the unique tasks
         */
        public void generate(HashSet<ITask> uniqueTasks);

        /**
         * Gets the gap penalty.
         *
         * @return the gap penalty
         */
        public float getGapPenalty();

        /**
         * Gets the score.
         *
         * @param pos1 the pos1
         * @param pos2 the pos2
         * @return the score
         */
        public float getScore(int pos1, int pos2);

        /**
         * Update.
         *
         * @param newlyGeneratedTasks the newly generated tasks
         */
        public void update(LinkedList<ITask> newlyGeneratedTasks);

}