Changeset 1314 for trunk/autoquest-plugin-alignment
- Timestamp:
- 09/20/13 00:14:32 (11 years ago)
- Location:
- trunk/autoquest-plugin-alignment
- Files:
-
- 30 added
-
.classpath (added)
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.project (added)
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pom.xml (added)
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src (added)
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src/main (added)
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src/main/java (added)
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src/main/java/de (added)
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src/main/java/de/ugoe (added)
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src/main/java/de/ugoe/cs (added)
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src/main/java/de/ugoe/cs/autoquest (added)
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src/main/java/de/ugoe/cs/autoquest/plugin (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/ALIGNMENTPlugin.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/Alignment.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/DifferenceSubstitutionMatrix.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/Match.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/NearbySubstitutionMatrix.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/SmithWaterman.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/SubstitutionMatrix.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/commands (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/commands/CMDbinaryAlignment.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/seqgen (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/seqgen/RandomSequenceGenerator.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/seqgen/SequenceGenerator.java (added)
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src/main/java/de/ugoe/cs/autoquest/plugin/alignment/seqgen/SimpleSequenceGenerator.java (added)
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src/main/resources (added)
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src/main/resources/manuals (added)
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src/main/resources/manuals/efgTestCasesToSequences (added)
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src/main/resources/manuals/efgToDFA (added)
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src/main/resources/manuals/efgToMM (added)
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