Changeset 1446 for trunk/autoquest-plugin-alignment/src/main/java/de/ugoe

Timestamp:

03/22/14 19:31:49 (11 years ago)

Author:

rkrimmel

Message:

Changed default sequences name to "sequences"

File:

• trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/commands/CMDbinaryAlignment.java (modified) (3 diffs)

trunk/autoquest-plugin-alignment/src/main/java/de/ugoe/cs/autoquest/plugin/alignment/commands/CMDbinaryAlignment.java

@@ -45 +45 @@
          */
         public void run(List<Object> parameters) {
-                String sequencesName;
+                String sequencesName = "sequences";
                 String algorithm;
                 try {
@@ -71 +71 @@
                                         SimpleSequenceGenerator gen = new SimpleSequenceGenerator();
                                         gen.generate(sequences);
-                                        int[] seq1 = gen.get(0);
-                                        int[] seq2 = gen.get(0);
+                                        int[] seq1 = gen.get(0).getSequence();
+                                        int[] seq2 = gen.get(0).getSequence();
                                         ObjectDistanceSubstitionMatrix submat = new ObjectDistanceSubstitionMatrix();
                                         submat.generate(sequences);
@@ -80 +80 @@
                                 sw.printDPMatrix();
                                 System.out.println();
-                                //sw.printAlignments();
+                                sw.printAlignments();
                                 // sw.getMatches();
                                 }