Changeset 1558 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

Timestamp:

05/29/14 22:43:07 (10 years ago)

Author:

rkrimmel

Message:

new Smith waterman variant

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java (modified) (3 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

@@ -28 +28 @@
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWaterman;
+import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWatermanRepeated;
 import de.ugoe.cs.autoquest.tasktrees.alignment.substitution.ObjectDistanceSubstitionMatrix;
 import de.ugoe.cs.autoquest.tasktrees.taskequality.TaskEquality;
@@ -145 +146 @@
         
         
-        
         // this is the real rule application. Loop while something is replaced.
         SymbolMap<ITaskInstance, ITask> uniqueTasks = harmonizeEventTaskInstancesModel(appData);
-        ObjectDistanceSubstitionMatrix submat = new ObjectDistanceSubstitionMatrix(uniqueTasks);  
+        ObjectDistanceSubstitionMatrix submat = new ObjectDistanceSubstitionMatrix(uniqueTasks,20);
         submat.generate();
-        
-        SmithWaterman sw = new SmithWaterman(numberseqs.get(1).getSequence(), numberseqs.get(1).getSequence(), submat);
-        
+      
+       
+        
+        System.out.print("Sequence 1: ");
+        NumberSequence ns1 = numberseqs.get(7);
+        NumberSequence ns2 = numberseqs.get(8);
+        ns1.printSequence();
+        System.out.print("Sequence 2: ");
+        ns2.printSequence();
+        //SmithWatermanRepeated sw = new SmithWatermanRepeated(numberseqs.get(20).getSequence(), numberseqs.get(24).getSequence(), submat,10);
+        SmithWatermanRepeated sw = new SmithWatermanRepeated(ns1.getSequence(), ns2.getSequence(), submat,15);
+        System.out.println("Max Scrore: " + sw.getMaxScore());
+        
+        sw.printDPMatrix();
    
         
         
-      
-        
-        
-        //Hier mein kram hin
+
         do {
             System.out.println();
@@ -165 +173 @@
             
             
-            appData.getStopWatch().start("whole loop");
-            detectAndReplaceIterations(appData);
-
-            appData.getStopWatch().start("task replacement");
-            detectAndReplaceTasks(appData);
-            appData.getStopWatch().stop("task replacement");
-            appData.getStopWatch().stop("whole loop");
-            
-            
-            appData.getStopWatch().dumpStatistics(System.out);
-            appData.getStopWatch().reset();
+            //appData.getStopWatch().start("whole loop");
+            //detectAndReplaceIterations(appData);
+
+            //appData.getStopWatch().start("task replacement");
+            //detectAndReplaceTasks(appData);
+            //appData.getStopWatch().stop("task replacement");
+            //appData.getStopWatch().stop("whole loop");
+            
+            
+            //appData.getStopWatch().dumpStatistics(System.out);
+            //appData.getStopWatch().reset();
             
         }