Changeset 1576 for branches/ralph/src/main/java/de/ugoe

Timestamp:

06/25/14 16:30:57 (10 years ago)

Author:

rkrimmel

Message:

Removing unneccessary debug output

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java (modified) (5 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

@@ -15 +15 @@
 package de.ugoe.cs.autoquest.tasktrees.temporalrelation;
 
-import java.io.File;
-import java.io.FileNotFoundException;
-import java.io.PrintWriter;
+
 import java.util.ArrayList;
 import java.util.HashMap;
@@ -28 +26 @@
 import java.util.logging.Level;
 
-import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.FengDoolittle;
+
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWatermanRepeated;
 import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.ObjectDistanceSubstitionMatrix;
-import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.TriangleMatrix;
 import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.UPGMAMatrix;
 import de.ugoe.cs.autoquest.tasktrees.alignment.pal.tree.UPGMATree;
@@ -171 +168 @@
                 for (int i = 0; i < numberseqs.size(); i++) {
                         NumberSequence ns1 = numberseqs.get(i);
-                        //System.out.print("Sequence " + i + ": ");
-                        //ns1.printSequence();
                         for (int j = 0; j < numberseqs.size(); j++) {
                                 NumberSequence ns2 = numberseqs.get(j);
@@ -208 +203 @@
                                         
                                         if(!Double.isInfinite(distance) && !Double.isNaN(distance)) {
-                                                //System.out.println("Score: " + String.format("%5.1f", score) + " sRand: " + String.format("%5.1f", sRand) + " sMax: " + String.format("%6.1f", sMax)  + " distance: " + String.format("%2.3f",distance));
                                                 if(distance < sequenceDistances.get(i, j)) {    
                                                         sequenceDistances.set(i,j,distance );
                                                 }
                                         }
-
-                                        if (score > 0) {
-                                                /*
-                                                 * System.out.println(
-                                                 * "=================================================");
-                                                 * System.out.println("| Sequence " +
-                                                 * String.format("%3d", i) +" Sequence " +
-                                                 * String.format("%3d", j) + "                     |");
-                                                 * System.out.println(
-                                                 * "=================================================");
-                                                 * System.out.print("Sequence " + i + ": ");
-                                                 * ns1.printSequence(); System.out.print("Sequence " + j
-                                                 * + ": "); ns2.printSequence(); System.out.println();
-                                                 * //System.out.println("Max Scrore: " +
-                                                 * sw.getMaxScore());
-                                                 * System.out.println("Alignment Score: " +
-                                                 * sw.getAlignmentScore()); //sw.printDPMatrix();
-                                                 * sw.traceback(); System.out.println();
-                                                 * System.out.println();
-                                                 */
-                                        }
-                                }
-                        }
-                }
-                System.out.println(sequenceDistances.toString());
+                                }
+                        }
+                }
                 UPGMATree guidetree = new UPGMATree(numberseqs, sequenceDistances);
-                System.out.println(guidetree.toString());
                 
+                /*
                 do {
                         System.out.println();
@@ -256 +228 @@
                         // appData.getStopWatch().reset();
 
-                } while (appData.detectedAndReplacedTasks());
+                } while (appData.detectedAndReplacedTasks()); */
 
                 Console.println("created "