Changeset 1577 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/UPGMATree.java

Timestamp:

06/25/14 16:31:25 (10 years ago)

Author:

rkrimmel

Message:

Finished UPGMA implementation

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/UPGMATree.java (modified) (3 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/UPGMATree.java

@@ -48 +48 @@
                 }
         
-                
+                this.numberseqs = numberseqs;
                 init(m);
 
@@ -104 +104 @@
                         Node tmp = NodeFactory.createNode();
                         tmp.setIdentifier(new Identifier(Integer.toString(i)));
-                        tmp.setSequence(0, numberseqs.get(i));
+                        tmp.addSequence(numberseqs.get(i));
                         getRoot().addChild(tmp);
                 }
@@ -147 +147 @@
                 abi = alias[besti];
                 abj = alias[bestj];
-                System.out.println("Found best pair: " + abi + "/" +abj + " - "+ besti+ "/"+bestj +" with distance " + dmin);
+                //System.out.println("Found best pair: " + abi + "/" +abj + " - "+ besti+ "/"+bestj +" with distance " + dmin);
                 
         }