Changeset 1579 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/FengDoolittleNode.java

Timestamp:

06/25/14 22:02:05 (10 years ago)

Author:

rkrimmel

Message:

Code cleanup, removed alot of unneccessary code from pal sources

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/FengDoolittleNode.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/FengDoolittleNode.java

@@ -14 +14 @@
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
 import de.ugoe.cs.autoquest.tasktrees.alignment.pal.misc.Identifier;
-import de.ugoe.cs.autoquest.tasktrees.alignment.pal.misc.LabelMapping;
 
 
@@ -89 +88 @@
         }
 
-        public FengDoolittleNode(Node n, boolean keepIds) {
-                init(n, keepIds);
-                for (int i = 0; i < n.getChildCount(); i++) {
-                        addChild(new FengDoolittleNode(n.getChild(i), keepIds));
-                }
-        }
-
-        public FengDoolittleNode(Node n, LabelMapping lm) {
-                init(n, true, lm);
-                for (int i = 0; i < n.getChildCount(); i++) {
-                        addChild(new FengDoolittleNode(n.getChild(i), lm));
-                }
-        }
-
-        
-        /** constructor used to clone a node and all children */
-        public FengDoolittleNode(Node n)
-        {
-                this(n, true);
-        }
-
-        
-
-        protected void init(Node n) {
-                init(n, true);
-        }
-        /**
-         * Initialized node instance variables based on given Node.
-         * children are ignored.
-         */
-        protected void init(Node n, boolean keepId) {
-                init(n,keepId,null);
-        }
-        /**
-         * Initialized node instance variables based on given Node.
-         * children are ignored.
-         * @param lm - may be null
-         */
-        protected void init(Node n, boolean keepId, LabelMapping lm) {
-                parent = null;
-                length = n.getBranchLength();
-                lengthSE = n.getBranchLengthSE();
-                height = n.getNodeHeight();
-                if (keepId) {
-                        if(lm!=null) {
-                                identifier = lm.getLabelIdentifier(n.getIdentifier());
-                        } else {
-                                identifier = n.getIdentifier();
-                        }
-                } else { identifier = Identifier.ANONYMOUS; }
-
-                number = n.getNumber();
-                sequences = n.getSequences();
-                child = null;
-        }
 
         /**