Changeset 1579 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/NodeUtils.java

Timestamp:

06/25/14 22:02:05 (10 years ago)

Author:

rkrimmel

Message:

Code cleanup, removed alot of unneccessary code from pal sources

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/NodeUtils.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/pal/tree/NodeUtils.java

@@ -12 +12 @@
 
 import de.ugoe.cs.autoquest.tasktrees.alignment.pal.io.FormattedOutput;
-import de.ugoe.cs.autoquest.tasktrees.alignment.pal.misc.BranchLimits;
 import de.ugoe.cs.autoquest.tasktrees.alignment.pal.misc.Identifier;
 
@@ -119 +118 @@
         }
 
-        /**
-         * determines branch lengths of this and all descendent nodes
-         * from heights
-         */
-        public static void heights2Lengths(Node node) {
-                heights2Lengths(node, true); //respect minimum
-        }
-
-        /**
-         * determines branch lengths of this and all descendent nodes
-         * from heights
-         */
-        public static void heights2Lengths(Node node, boolean respectMinimum) {
-
-                for (int i = 0; i < node.getChildCount(); i++) {
-                        heights2Lengths(node.getChild(i));
-                }
-
-                if (node.isRoot()) {
-                        node.setBranchLength(0.0);
-                }
-                else {
-                        node.setBranchLength(node.getParent().getNodeHeight() - node.getNodeHeight());
-                        if (respectMinimum && (node.getBranchLength() < BranchLimits.MINARC))
-                        {
-                                node.setBranchLength(BranchLimits.MINARC);
-                        }
-                }
-        }
-
-        /**
-         * determines branch lengths of this node and its immediate descendent nodes
-         * from heights.
-         */
-        public static void localHeights2Lengths(Node node, boolean respectMinimum) {
-
-                for (int i = 0; i < node.getChildCount(); i++) {
-                        Node child = node.getChild(i);
-
-                        child.setBranchLength(node.getNodeHeight() - child.getNodeHeight());
-                }
-
-                if (node.isRoot()) {
-                        node.setBranchLength(0.0);
-                }
-                else {
-                        node.setBranchLength(node.getParent().getNodeHeight() - node.getNodeHeight());
-                        if (respectMinimum && (node.getBranchLength() < BranchLimits.MINARC))
-                        {
-                                node.setBranchLength(BranchLimits.MINARC);
-                        }
-                }
-        }
+