Changeset 1581 for branches/ralph/src/main/java/de/ugoe/cs/autoquest

Timestamp:

06/26/14 23:18:23 (10 years ago)

Author:

rkrimmel

Message:

Fixed check if traceback is too long.

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java

@@ -227 +227 @@
                         if(count != 0)
                         {
+                                if (length1+length2+2 == count) {       
+                                        Console.traceln(Level.WARNING, "Traceback longer than both sequences summed up!");
+                                        break;
+                                }
                                 aligned1[count] = tmp.getXvalue();
                                 aligned2[count] = tmp.getYvalue();
@@ -233 +237 @@
                         tmp = tmp.getPrevious();
                         count++;
-                if (length1+length2+2 == count) {       
-                        Console.traceln(Level.WARNING, "Traceback longer than both sequences summed up!");
-                        break;
-                }
-                        
+                
                 } while(tmp != null);
                 count--;