- Timestamp:
- 06/29/14 11:11:30 (10 years ago)
- Location:
- branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix
- Files:
-
- 2 edited
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-
branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/BinaryAlignmentStorage.java
r1584 r1585 9 9 UPGMAMatrix sequenceDistances; 10 10 11 public BinaryAlignmentStorage(int size ) {12 alignments = new SmithWatermanRepeated[size ][size];13 sequenceDistances = new UPGMAMatrix( size);11 public BinaryAlignmentStorage(int sizex, int sizey) { 12 alignments = new SmithWatermanRepeated[sizex+1][sizey+1]; 13 sequenceDistances = new UPGMAMatrix(Math.max(sizex,sizey)); 14 14 sequenceDistances.initialize(Double.POSITIVE_INFINITY); 15 15 } -
branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/ObjectDistanceSubstitionMatrix.java
r1578 r1585 29 29 idmapping = new HashMap<Integer, Integer>(); 30 30 matrix = new TriangleMatrix(uniqueTasks.size()+1); 31 gapPenalty = - 5;31 gapPenalty = -3; 32 32 33 33 }
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