Changeset 1585 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/BinaryAlignmentStorage.java

Timestamp:

06/29/14 11:11:30 (10 years ago)

Author:

rkrimmel

Message:

Multiple Alignment first version

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/BinaryAlignmentStorage.java (modified) (1 diff)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/BinaryAlignmentStorage.java

@@ -9 +9 @@
     UPGMAMatrix sequenceDistances;
    
-    public BinaryAlignmentStorage(int size) {
-        alignments = new SmithWatermanRepeated[size][size];
-        sequenceDistances = new UPGMAMatrix(size);
+    public BinaryAlignmentStorage(int sizex, int sizey) {
+        alignments = new SmithWatermanRepeated[sizex+1][sizey+1];
+        sequenceDistances = new UPGMAMatrix(Math.max(sizex,sizey));
         sequenceDistances.initialize(Double.POSITIVE_INFINITY);
     }