Changeset 1586 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java

Timestamp:

06/30/14 08:51:09 (10 years ago)

Author:

rkrimmel

Message:

Adding simple smith waterman and changing alignment algorithm creation to factory pattern

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java (modified) (3 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java

@@ -8 +8 @@
 import de.ugoe.cs.util.console.Console;
 
-public class SmithWatermanRepeated {
+public class SmithWatermanRepeated implements AlignmentAlgorithm {
 
         /**
@@ -208 +208 @@
         }
 
-        /**
-         * Get the alignment score between the two input strings.
-         */
+        /* (non-Javadoc)
+         * @see de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithm#getAlignmentScore()
+         */
+        @Override
         public double getAlignmentScore() {
                 return matrix[length1+1][0].getScore();
@@ -328 +329 @@
 
 
+        /* (non-Javadoc)
+         * @see de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithm#getAlignment()
+         */
+        @Override
         public ArrayList<NumberSequence> getAlignment() {
                 return alignment;