Changeset 1589 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/PairwiseAlignmentStorage.java

Timestamp:

07/09/14 12:13:13 (10 years ago)

Author:

rkrimmel

Message:

Refactoring and code cleanup

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/PairwiseAlignmentStorage.java (moved) (moved from branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/BinaryAlignmentStorage.java) (1 diff)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/PairwiseAlignmentStorage.java

@@ -1 +1 @@
 package de.ugoe.cs.autoquest.tasktrees.alignment.matrix;
+
+
 
 
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithm;
 
-public class BinaryAlignmentStorage {
+
+public class PairwiseAlignmentStorage {
 
     private AlignmentAlgorithm[][] alignments;
-    UPGMAMatrix sequenceDistances;
+    private UPGMAMatrix sequenceDistances;
    
-    public BinaryAlignmentStorage(int sizex, int sizey) {
+    public PairwiseAlignmentStorage(int sizex, int sizey) {
         alignments = new AlignmentAlgorithm[sizex+1][sizey+1];
         sequenceDistances = new UPGMAMatrix(Math.max(sizex,sizey));
         sequenceDistances.initialize(Double.POSITIVE_INFINITY);
     }
+ 
+    
     
     public void set(int i,int j,AlignmentAlgorithm sw) {