Ignore:
Timestamp:
07/15/14 15:56:46 (10 years ago)
Author:
rkrimmel
Message:

Fixed bug in needlemanwunsch traceback

File:
1 edited

Legend:

Unmodified
Added
Removed

  • branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/ObjectDistanceSubstitionMatrix.java

    r1587 r1615  
    2121        private SymbolMap<ITaskInstance, ITask> uniqueTasks; 
    2222        private double gapPenalty;  
     23         
    2324        private double positiveThreshold; 
    2425         
    … …  
    2930                idmapping = new HashMap<Integer, Integer>(); 
    3031                matrix = new TriangleMatrix(uniqueTasks.size()+1); 
    31                 gapPenalty = -2; 
     32                gapPenalty = -3; 
    3233                 
    3334        } 
    3435 
    35         @Override 
     36 
    3637        public double getGapPenalty() { 
    3738                return gapPenalty; 
    3839        } 
     40         
     41        public void setGapPenalty(double gapPenalty) { 
     42                this.gapPenalty = gapPenalty; 
     43        } 
    3944 
    40         @Override 
    4145        public void generate() { 
    4246         
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