Changeset 1618 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/PairwiseAlignmentGenerator.java

Timestamp:

07/16/14 18:07:05 (10 years ago)

Author:

rkrimmel

Message:

Startet implementing signigicant match detection

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/PairwiseAlignmentGenerator.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/matrix/PairwiseAlignmentGenerator.java

@@ -3 +3 @@
 import java.util.ArrayList;
 import java.util.Iterator;
+import java.util.logging.Level;
 
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithm;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithmFactory;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
+import de.ugoe.cs.util.console.Console;
 
 public class PairwiseAlignmentGenerator {
@@ -22 +24 @@
 
                                 if (i != j) {
+                                        Console.traceln(Level.FINEST,"Aligning sequence " + i + " with sequence " + j);
                                         int smithWatermanThreshold = 10;
                                         AlignmentAlgorithm aa = AlignmentAlgorithmFactory.create();