Changeset 1620 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWaterman.java

Timestamp:

07/23/14 18:18:11 (10 years ago)

Author:

rkrimmel

Message:

More intelligent match finding and creation

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWaterman.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWaterman.java

@@ -265 +265 @@
 
         @Override
-        public ArrayList<ArrayList<NumberSequence>> getMatches() {
+        public ArrayList<Match> getMatches() {
                 // TODO Auto-generated method stub
                 return null;
@@ -271 +271 @@
 
         @Override
-        public void align(int[] input1, int[] input2, SubstitutionMatrix submat,
+        public void align(NumberSequence input1, NumberSequence input2, SubstitutionMatrix submat,
                         float threshold) {
-                this.input1 = input1;
-                this.input2 = input2;
-                length1 = input1.length;
-                length2 = input2.length;
+                this.input1 = input1.getSequence();
+                this.input2 = input2.getSequence();
+                length1 = input1.size();
+                length2 = input2.size();
                 this.submat = submat;