Changeset 1554 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

Timestamp:

05/23/14 21:54:40 (10 years ago)

Author:

rkrimmel

Message:

Moved alignment plugin into core-tasktrees

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java (modified) (6 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

@@ -26 +26 @@
 
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
+import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWaterman;
+import de.ugoe.cs.autoquest.tasktrees.alignment.substitution.ObjectDistanceSubstitionMatrix;
 import de.ugoe.cs.autoquest.tasktrees.taskequality.TaskEquality;
 import de.ugoe.cs.autoquest.tasktrees.treeifc.IIteration;
@@ -140 +142 @@
         numberseqs = new ArrayList<NumberSequence>();
         
+        
+        
         // this is the real rule application. Loop while something is replaced.
-        harmonizeEventTaskInstancesModel(appData);
+        SymbolMap<ITaskInstance, ITask> uniqueTasks = harmonizeEventTaskInstancesModel(appData,numberseqs);
+        ObjectDistanceSubstitionMatrix submat = new ObjectDistanceSubstitionMatrix(uniqueTasks);  
+        submat.generate();
+        
+        
+        SmithWaterman sm = new SmithWaterman(numberseqs.get(0).getSequence(), numberseqs.get(0).getSequence(), submat);
+        sm.printDPMatrix();
+      
         
         
@@ -188 +199 @@
      *
      * @param appData the rule application data combining all data used for applying this rule
-     */
-    private void harmonizeEventTaskInstancesModel(RuleApplicationData appData) {
+     * @return Returns the unique tasks symbol map
+     */
+    private SymbolMap<ITaskInstance, ITask> harmonizeEventTaskInstancesModel(RuleApplicationData appData, ArrayList<NumberSequence> numberseqs) {
         Console.traceln(Level.INFO, "harmonizing task model of event task instances");
         appData.getStopWatch().start("harmonizing event tasks");
@@ -201 +213 @@
         List<IUserSession> sessions = appData.getSessions();
         int sessionNo = 0;
+        numberseqs = new ArrayList<NumberSequence>();
         for (IUserSession session : sessions) {
             Console.traceln(Level.FINE, "handling " + (++sessionNo) + ". " + session);
@@ -219 +232 @@
                 }
             }
-            
+            numberseqs.add(templist);
             comparator.clearBuffers();
         }
@@ -229 +242 @@
         appData.getStopWatch().dumpStatistics(System.out);
         appData.getStopWatch().reset();
+                return uniqueTasks;
     }