Ignore:
Timestamp:
06/29/14 11:11:30 (10 years ago)
Author:
rkrimmel
Message:

Multiple Alignment first version

File:
1 edited

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  • branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

    r1584 r1585  
    159159 
    160160         
    161                 BinaryAlignmentStorage alignments = new BinaryAlignmentStorage(numberseqs.size()); 
     161                BinaryAlignmentStorage alignments = new BinaryAlignmentStorage(numberseqs.size(),numberseqs.size()); 
    162162 
    163163 
    … …  
    207207                } 
    208208                //System.out.println(sequenceDistances.toString()); 
    209                 UPGMAAligningTree guidetree = new UPGMAAligningTree(numberseqs, alignments); 
    210                  
     209                UPGMAAligningTree guidetree = new UPGMAAligningTree(numberseqs, alignments,submat); 
     210 
     211                for (Iterator<NumberSequence> it =  guidetree.getRoot().getChild(0).getSequences().iterator(); it.hasNext();) { 
     212                        NumberSequence tmp  = it.next(); 
     213                        tmp.printSequence(); 
     214                } 
    211215         
    212216                /* 
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