Changeset 1586 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

Timestamp:

06/30/14 08:51:09 (10 years ago)

Author:

rkrimmel

Message:

Adding simple smith waterman and changing alignment algorithm creation to factory pattern

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

@@ -26 +26 @@
 import java.util.logging.Level;
 
+import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithm;
+import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithmFactory;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWatermanRepeated;
@@ -170 +172 @@
                                         int smithWatermanThreshold = 10;
 
-                                        alignments.set(i, j,new SmithWatermanRepeated(
+                                        alignments.set(i, j,AlignmentAlgorithmFactory.create(
                                                         ns1.getSequence(), ns2.getSequence(), submat,
                                                         smithWatermanThreshold));
-                                        SmithWatermanRepeated sameSequence1 = new SmithWatermanRepeated(
+                                        AlignmentAlgorithm sameSequence1 = AlignmentAlgorithmFactory.create(
                                                         ns1.getSequence(), ns1.getSequence(), submat,
                                                         smithWatermanThreshold);
-                                        SmithWatermanRepeated sameSequence2 = new SmithWatermanRepeated(
+                                        AlignmentAlgorithm sameSequence2 = AlignmentAlgorithmFactory.create(
                                                         ns2.getSequence(), ns2.getSequence(), submat,
                                                         smithWatermanThreshold);
-                                        SmithWatermanRepeated randomSequence = new SmithWatermanRepeated(
+                                        AlignmentAlgorithm randomSequence = AlignmentAlgorithmFactory.create(
                                                         ns1.shuffle().getSequence(),ns2.shuffle().getSequence(),submat,smithWatermanThreshold);