Changeset 1587 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

Timestamp:

07/04/14 00:38:41 (10 years ago)

Author:

rkrimmel

Message:

Adding needleman wunsch

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java (modified) (1 diff)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

@@ -208 +208 @@
                         }
                 }
-                //System.out.println(sequenceDistances.toString());
+                //alignments.get(20, 47).printDPMatrix();
+                //alignments.get(20, 47).printAlignment();
+                
+                System.out.println(alignments.getDistanceMatrix().toString());
                 UPGMAAligningTree guidetree = new UPGMAAligningTree(numberseqs, alignments,submat);
-
-                for (Iterator<NumberSequence> it =  guidetree.getRoot().getChild(0).getSequences().iterator(); it.hasNext();) {
+                //System.out.println("Number of sequences in root node: " + guidetree.getRoot().getSequences().size());
+                for (Iterator<NumberSequence> it =  guidetree.getRoot().getSequences().iterator(); it.hasNext();) {
                         NumberSequence tmp  = it.next();
                         tmp.printSequence();
                 }
+                
         
                 /*