Changeset 1588 for branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

Timestamp:

07/08/14 21:38:11 (10 years ago)

Author:

rkrimmel

Message:

Fixed Needleman Wunsch Algorithm

File:

• branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java (modified) (2 diffs)

branches/ralph/src/main/java/de/ugoe/cs/autoquest/tasktrees/temporalrelation/SequenceForTaskDetectionRuleAlignment.java

@@ -29 +29 @@
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.AlignmentAlgorithmFactory;
 import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.NumberSequence;
-import de.ugoe.cs.autoquest.tasktrees.alignment.algorithms.SmithWatermanRepeated;
 import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.BinaryAlignmentStorage;
 import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.ObjectDistanceSubstitionMatrix;
-import de.ugoe.cs.autoquest.tasktrees.alignment.matrix.UPGMAMatrix;
 import de.ugoe.cs.autoquest.tasktrees.alignment.pal.tree.UPGMAAligningTree;
 import de.ugoe.cs.autoquest.tasktrees.taskequality.TaskEquality;
@@ -211 +209 @@
                 //alignments.get(20, 47).printAlignment();
                 
-                System.out.println(alignments.getDistanceMatrix().toString());
+                System.out.println(alignments.getDistanceMatrix());
                 UPGMAAligningTree guidetree = new UPGMAAligningTree(numberseqs, alignments,submat);
-                //System.out.println("Number of sequences in root node: " + guidetree.getRoot().getSequences().size());
+                System.out.println("Number of sequences in root node: " + guidetree.getRoot().getSequences().size());
                 for (Iterator<NumberSequence> it =  guidetree.getRoot().getSequences().iterator(); it.hasNext();) {
                         NumberSequence tmp  = it.next();