Changeset 1654 for branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java

Timestamp:

08/08/14 22:43:30 (10 years ago)

Author:

rkrimmel

Message:

Adding Debug output to find this freaking damn error.

File:

• branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java (modified) (2 diffs)

branches/autoquest-core-tasktrees-alignment/src/main/java/de/ugoe/cs/autoquest/tasktrees/alignment/algorithms/SmithWatermanRepeated.java

@@ -227 +227 @@
                 }
 
+                
                 NumberSequence ns1 = new NumberSequence(reversed1.length);
                 NumberSequence ns2 = new NumberSequence(reversed2.length);
@@ -304 +305 @@
                                 tmpal.setFirstSequence(tmpns1);
                                 tmpal.setSecondSequence(tmpns2);
-                                tmpal.addOccurence(new MatchOccurence(start,alignment.get(0).getId()));
-                                tmpal.addOccurence(new MatchOccurence(start,alignment.get(1).getId()));
+                                //tmpal.addOccurence(new MatchOccurence(start,alignment.get(0).getId()));
+                                //tmpal.addOccurence(new MatchOccurence(start,alignment.get(1).getId()));
                                 result.add(tmpal);
                         }